PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV44107.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ARF
Protein Properties Length: 917aa    MW: 101781 Da    PI: 5.2142
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV44107.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.17.9e-24146247199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae+       + ++  +++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD v+F   ++++ +l+
  KZV44107.1 146 FCKTLTASDTSTHGGFSVPRRAAEKLfpqldySVQP-PTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDAVLFI--RDEKSQLL 241
                 99*********************999****974343.3459************************************************..45677789 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++v+r 
  KZV44107.1 242 LGVRRV 247
                 999985 PP

2Auxin_resp121.18.3e-40272355183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++++F+++YnPra++seFvv+++k++kal+ +++s+GmRf m+feteds++rr++Gt++g+sdldp+rWpnSkWrsL+
  KZV44107.1 272 AAHAAANRTPFTIFYNPRACPSEFVVPLAKYRKALYgTQLSIGMRFGMMFETEDSNKRRYMGTITGISDLDPLRWPNSKWRSLQ 355
                 79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-46132275IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-40137260IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-21145246No hitNo description
PfamPF023623.3E-21146247IPR003340B3 DNA binding domain
SMARTSM010194.8E-23146248IPR003340B3 DNA binding domain
PROSITE profilePS5086312.774146248IPR003340B3 DNA binding domain
PfamPF065071.3E-34272355IPR010525Auxin response factor
PROSITE profilePS5174520.853784868IPR000270PB1 domain
SuperFamilySSF542772.62E-6798852No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 917 aa     Download sequence    Send to blast
MASVEEKFKP EGLVNGGLNI LEGMRLLKEM QDQTGVKKPM NSELWHACAG PLVNLPQVGS  60
LVYYFPQGHS EQVAASTNRS ATTQIPSYPN LPSHLLCQVH NVTLHADKDT DEIYAQMSLQ  120
PVNSEKDVFP IPDFRVKPSK HPAEFFCKTL TASDTSTHGG FSVPRRAAEK LFPQLDYSVQ  180
PPTQELVVRD LHENTWTFRH IYRGQPKRHL LTTGWSMFVG AKRLRAGDAV LFIRDEKSQL  240
LLGVRRVNRQ QAALPSSVLS ADSMHIGVLA AAAHAAANRT PFTIFYNPRA CPSEFVVPLA  300
KYRKALYGTQ LSIGMRFGMM FETEDSNKRR YMGTITGISD LDPLRWPNSK WRSLQVEWDE  360
PGCCDKQSRV SPWEIETPES LFIFPSLTGN LKRPFLSAFL GAQTEWEALI NRPLFHSPLG  420
DLQCPLVSSL WSDQLTKMVV KDAALQESKS LVQPANKLTP PQIIPPDMES YPDRLVGSQK  480
NIMNSNGLLP AIPEAPEKVV HQTSMDTVGP ELATDQLSQV QSQEQCYDNK NDIPVMNQSN  540
GMQLSPAIGQ SRLDSEIFQT PQSDPTHVQS NNLNALFQYP SQVEFNQYPS ICPSPSGMFR  600
NLGYSSVFKK SVQPSPLPET VSKLPPLGQE SWDFHFNNAK CISQTSLPTL LPHQEMGALQ  660
YNSCGLKDLS DESQNQSDIY SCLNLGENNN GSSVIGPVSG TILDDICALK NTDFQNPSDY  720
LVGNFCPNQD GQSQITSASL ADSQTFSLQE YADNSGGASS SNVDFDDRTL LQHGSWQQVT  780
PRFRTYTKIQ KVGSVGRSID VSSFKTYDEL RSEIEHMFGL KGLLNDMASG WKLVYVDFEN  840
DVLLVGDDPW EADNFLDIKC CIDSCREFVG CVKCIRILSP SEVQQMGEEG MQLLNSARVQ  900
AVNGSVSEDG CDKNGSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.013805392Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083507.10.0PREDICTED: auxin response factor 5
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLA0A068UFS90.0A0A068UFS9_COFCA; Auxin response factor
STRINGSolyc04g081240.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58592334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein